Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
BRCA | rs6115666 | chr20:2759467 | T/G | 1.44E-5 | 1016 | 22.13 | 21.17 | 14.5 | KM Plot |
BRCA | rs6115667 | chr20:2761240 | G/A | 2.64E-5 | 1019 | 22.2 | 20.8 | 14.5 | KM Plot |
BRCA | rs6115668 | chr20:2761764 | A/G | 3.38E-5 | 1009 | 22.2 | 20.73 | 14.5 | KM Plot |
BRCA | rs61316646 | chr18:44610670 | G/C | 2.1E-5 | 1022 | 21.7 | 22.2 | 18.13 | KM Plot |
BRCA | rs6138504 | chr20:25115230 | G/A | 2.42E-6 | 1024 | 21.67 | 22.6 | 13.52 | KM Plot |
BRCA | rs6138506 | chr20:25115636 | C/T | 2.16E-6 | 1028 | 21.53 | 23.23 | 13.52 | KM Plot |
BRCA | rs61392096 | chr2:86496875 | G/A | 2.61E-6 | 1026 | 21.95 | 19.47 | 12.17 | KM Plot |
BRCA | rs61636758 | chr2:86497480 | T/C | 2.61E-6 | 1026 | 21.95 | 19.47 | 12.17 | KM Plot |
BRCA | rs61637857 | chr19:15167128 | G/T | 1.35E-5 | 1020 | 21.48 | 23.7 | 11.98 | KM Plot |
BRCA | rs61689863 | chr18:44669157 | A/T | 6.71E-6 | 1026 | 21.73 | 21.58 | 18.13 | KM Plot |
BRCA | rs62096463 | chr18:44628928 | A/G | 2.08E-5 | 1024 | 21.57 | 22.2 | 18.13 | KM Plot |
BRCA | rs62096464 | chr18:44629207 | T/A | 2.08E-5 | 1024 | 21.57 | 22.2 | 18.13 | KM Plot |
BRCA | rs62096466 | chr18:44636171 | T/G | 2.12E-5 | 1022 | 21.57 | 22.2 | 18.13 | KM Plot |
BRCA | rs62096469 | chr18:44638298 | A/G | 2.12E-5 | 1022 | 21.57 | 22.2 | 18.13 | KM Plot |
BRCA | rs62096470 | chr18:44641466 | G/C | 2.12E-5 | 1022 | 21.57 | 22.2 | 18.13 | KM Plot |